In this paper, we propose a novel data-driven approach for learning and control of quadrotor UAVs based on the Koopman operator and extended dynamic mode decomposition (EDMD). Building observables for EDMD based on conventional methods like Euler angles or quaternions to represent orientation is known to involve singularities. To address this issue, we employ a set of physics-informed observables based on the underlying topology of the nonlinear system. We use rotation matrices to directly represent the orientation dynamics and obtain a lifted linear representation of the nonlinear quadrotor dynamics in the SE(3) manifold. This EDMD model leads to accurate prediction and can generalize to several validation sets. Further, we design a linear model predictive controller (MPC) based on the proposed EDMD model to track agile reference trajectories. Simulation results show that the proposed MPC controller can run as fast as 100 Hz and is able to track arbitrary reference trajectories with good accuracy. Implementation details can be found in \url{https://github.com/sriram-2502/KoopmanMPC_Quadrotor}
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