Deep Learning for Medical Image Segmentation with Imprecise Annotation

Medical image segmentation (MIS) plays an instrumental role in medical image analysis, where considerable efforts have been devoted to automating the process. Currently, mainstream MIS approaches are based on deep neural networks (DNNs) which are typically trained on a dataset that contains annotation masks produced by doctors. However, in the medical domain, the annotation masks generated by different doctors can inherently vary because a doctor may unnecessarily produce precise and unique annotations to meet the goal of diagnosis. Therefore, the DNN model trained on the data annotated by certain doctors, often just a single doctor, could undesirably favour those doctors who annotate the training data, leading to the unsatisfaction of a new doctor who will use the trained model. To address this issue, this work investigates the utilization of multi-expert annotation to enhance the adaptability of the model to a new doctor and we conduct a pilot study on the MRI brain segmentation task. Experimental results demonstrate that the model trained on a dataset with multi-expert annotation can efficiently cater for a new doctor, after lightweight fine-tuning on just a few annotations from the new doctor.