Denoising diffusion models (DDMs) offer a promising generative approach for combinatorial optimization, yet they often lack the robust exploration capabilities of traditional metaheuristics like evolutionary algorithms (EAs). We propose a Denoising Diffusion-based Evolutionary Algorithm (DDEA) framework that synergistically integrates these paradigms. It utilizes pre-trained DDMs for both high-quality and diverse population initialization and a novel diffusion-based recombination operator, trained via imitation learning against an optimal demonstrator. Evaluating DDEA on the Maximum Independent Set problem on Erd\H{o}s-R\'enyi graphs, we demonstrate notable improvements over DIFUSCO, a leading DDM solver. DDEA consistently outperforms it given the same time budget, and surpasses Gurobi on larger graphs under the same time limit, with DDEA's solution sizes being 3.9% and 7.5% larger on the ER-300-400 and ER-700-800 datasets, respectively. In out-of-distribution experiments, DDEA provides solutions of 11.6% higher quality than DIFUSCO under the same time limit. Ablation studies confirm that both diffusion initialization and recombination are crucial. Our work highlights the potential of hybridizing DDMs and EAs, offering a promising direction for the development of powerful machine learning solvers for complex combinatorial optimization problems.
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