We present an algorithm for the efficient generation of all pairwise non-isomorphic cycle permutation graphs, i.e. cubic graphs with a $2$-factor consisting of two chordless cycles, and non-hamiltonian cycle permutation graphs, from which the permutation snarks can easily be computed. This allows us to generate all cycle permutation graphs up to order $34$ and all permutation snarks up to order $46$, improving upon previous computational results by Brinkmann et al. Moreover, we give several improved lower bounds for interesting permutation snarks, such as for a smallest permutation snark of order $6 \bmod 8$ or a smallest permutation snark of girth at least $6$. These computational results also allow us to complete a characterisation of the orders for which non-hamiltonian cycle permutation graphs exist, answering an open question by Klee from 1972, and yield many more counterexamples to a conjecture by Zhang.
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