Mediation analysis has been comprehensively studied for independent data but relatively little work has been done for correlated data, especially for the increasingly adopted stepped wedge cluster randomized trials (SW-CRTs). Motivated by challenges in underlying the effect mechanisms in pragmatic and implementation science clinical trials, we develop new methods for mediation analysis in SW-CRTs. Specifically, based on a linear and generalized linear mixed models, we demonstrate how to estimate the natural indirect effect and mediation proportion in typical SW-CRTs with four data types, including both continuous and binary mediators and outcomes. Furthermore, to address the emerging challenges in exposure-time treatment effect heterogeneity, we derive the mediation expressions in SW-CRTs when the total effect varies as a function of the exposure time. The cluster jackknife approach is considered for inference across all data types and treatment effect structures. We conduct extensive simulations to evaluate the finite-sample performances of proposed mediation estimators and demonstrate the proposed approach in a real data example. A user-friendly R package mediateSWCRT has been developed to facilitate the practical implementation of the estimators.
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