Bayesian inference paradigms are regarded as powerful tools for solution of inverse problems. However, when applied to inverse problems in physical sciences, Bayesian formulations suffer from a number of inconsistencies that are often overlooked. A well known, but mostly neglected, difficulty is connected to the notion of conditional probability densities. Borel, and later Kolmogorov's (1933/1956), found that the traditional definition of conditional densities is incomplete: In different parameterizations it leads to different results. We will show an example where two apparently correct procedures applied to the same problem lead to two widely different results. Another type of inconsistency involves violation of causality. This problem is found in model selection strategies in Bayesian inversion, such as Hierarchical Bayes and Trans-Dimensional Inversion where so-called hyperparameters are included as variables to control either the number (or type) of unknowns, or the prior uncertainties on data or model parameters. For Hierarchical Bayes we demonstrate that the calculated 'prior' distributions of data or model parameters are not prior-, but posterior information. In fact, the calculated 'standard deviations' of the data are a measure of the inability of the forward function to model the data, rather than uncertainties of the data. For trans-dimensional inverse problems we show that the so-called evidence is, in fact, not a measure of the success of fitting the data for the given choice (or number) of parameters, as often claimed. We also find that the notion of Natural Parsimony is ill-defined, because of its dependence on the parameter prior. Based on this study, we find that careful rethinking of Bayesian inversion practices is required, with special emphasis on ways of avoiding the Borel-Kolmogorov inconsistency, and on the way we interpret model selection results.
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