Improving the future of healthcare starts by better understanding the current actual practices in hospital settings. This motivates the objective of discovering typical care pathways from patient data. Revealing typical care pathways can be achieved through clustering. The difficulty in clustering care pathways, represented by sequences of timestamped events, lies in defining a semantically appropriate metric and clustering algorithms. In this article, we adapt two methods developed for time series to the clustering of timed sequences: the drop-DTW metric and the DBA approach for the construction of averaged time sequences. These methods are then applied in clustering algorithms to propose original and sound clustering algorithms for timed sequences. This approach is experimented with and evaluated on synthetic and real-world data.
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Quantum machine learning (QML) requires significant quantum resources to address practical real-world problems. When the underlying quantum information exhibits hierarchical structures in the data, limitations persist in training complexity and generalization. Research should prioritize both the efficient design of quantum architectures and the development of learning strategies to optimize resource usage. We propose a framework called quantum curriculum learning (Q-CurL) for quantum data, where the curriculum introduces simpler tasks or data to the learning model before progressing to more challenging ones. Q-CurL exhibits robustness to noise and data limitations, which is particularly relevant for current and near-term noisy intermediate-scale quantum devices. We achieve this through a curriculum design based on quantum data density ratios and a dynamic learning schedule that prioritizes the most informative quantum data. Empirical evidence shows that Q-CurL significantly enhances training convergence and generalization for unitary learning and improves the robustness of quantum phase recognition tasks. Q-CurL is effective with broad physical learning applications in condensed matter physics and quantum chemistry.
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Retrieval-augmented generation (RAG) mitigates hallucination in Large Language Models (LLMs) by using query pipelines to retrieve relevant external information and grounding responses in retrieved knowledge. However, query pipeline optimization for cancer patient question-answering (CPQA) systems requires separately optimizing multiple components with domain-specific considerations. We propose a novel three-aspect optimization approach for the RAG query pipeline in CPQA systems, utilizing public biomedical databases like PubMed and PubMed Central. Our optimization includes: (1) document retrieval, utilizing a comparative analysis of NCBI resources and introducing Hybrid Semantic Real-time Document Retrieval (HSRDR); (2) passage retrieval, identifying optimal pairings of dense retrievers and rerankers; and (3) semantic representation, introducing Semantic Enhanced Overlap Segmentation (SEOS) for improved contextual understanding. On a custom-developed dataset tailored for cancer-related inquiries, our optimized RAG approach improved the answer accuracy of Claude-3-haiku by 5.24% over chain-of-thought prompting and about 3% over a naive RAG setup. This study highlights the importance of domain-specific query optimization in realizing the full potential of RAG and provides a robust framework for building more accurate and reliable CPQA systems, advancing the development of RAG-based biomedical systems.
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In analog neuromorphic chips, designers can embed computing primitives in the intrinsic physical properties of devices and circuits, heavily reducing device count and energy consumption, and enabling high parallelism, because all devices are computing simultaneously. Neural network parameters can be stored in local analog non-volatile memories (NVMs), saving the energy required to move data between memory and logic. However, the main drawback of analog sub-threshold electronic circuits is their dramatic temperature sensitivity. In this paper, we demonstrate that a temperature compensation mechanism can be devised to solve this problem. We have designed and fabricated a chip implementing a two-layer analog neural network trained to classify low-resolution images of handwritten digits with a low-cost single-poly complementary metal-oxide-semiconductor (CMOS) process, using unconventional analog NVMs for weight storage. We demonstrate a temperature-resilient analog neuromorphic chip for image recognition operating between 10$^{\circ}$C and 60$^{\circ}$C without loss of classification accuracy, within 2\% of the corresponding software-based neural network in the whole temperature range.
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Large Language Model (LLM) based coding tools have been tremendously successful as software development assistants, yet they are often designed for general purpose programming tasks and perform poorly for more specialized domains such as high performance computing. Creating specialized models and tools for these domains is crucial towards gaining the benefits of LLMs in areas such as HPC. While previous work has explored HPC-specific models, LLMs still struggle to generate parallel code and it is not at all clear what hurdles are still holding back these LLMs and what must be done to overcome them. In this work, we conduct an in-depth study along the many axes of fine-tuning a specialized HPC LLM in order to better understand the challenges. Based on our findings we fine-tune and evaluate a specialized HPC LLM that is shown to be the best performing open-source code LLM for parallel code generation to date.
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The rapid advancement of AI has underscored critical challenges in its development and implementation, largely due to centralized control by a few major corporations. This concentration of power intensifies biases within AI models, resulting from inadequate governance and oversight mechanisms. Additionally, it limits public involvement and heightens concerns about the integrity of model generation. Such monopolistic control over data and AI outputs threatens both innovation and fair data usage, as users inadvertently contribute data that primarily benefits these corporations. In this work, we propose AIArena, a blockchain-based decentralized AI training platform designed to democratize AI development and alignment through on-chain incentive mechanisms. AIArena fosters an open and collaborative environment where participants can contribute models and computing resources. Its on-chain consensus mechanism ensures fair rewards for participants based on their contributions. We instantiate and implement AIArena on the public Base blockchain Sepolia testnet, and the evaluation results demonstrate the feasibility of AIArena in real-world applications.
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Self-supervision is often used for pre-training to foster performance on a downstream task by constructing meaningful representations of samples. Self-supervised learning (SSL) generally involves generating different views of the same sample and thus requires data augmentations that are challenging to construct for tabular data. This constitutes one of the main challenges of self-supervision for structured data. In the present work, we propose a novel augmentation-free SSL method for tabular data. Our approach, T-JEPA, relies on a Joint Embedding Predictive Architecture (JEPA) and is akin to mask reconstruction in the latent space. It involves predicting the latent representation of one subset of features from the latent representation of a different subset within the same sample, thereby learning rich representations without augmentations. We use our method as a pre-training technique and train several deep classifiers on the obtained representation. Our experimental results demonstrate a substantial improvement in both classification and regression tasks, outperforming models trained directly on samples in their original data space. Moreover, T-JEPA enables some methods to consistently outperform or match the performance of traditional methods likes Gradient Boosted Decision Trees. To understand why, we extensively characterize the obtained representations and show that T-JEPA effectively identifies relevant features for downstream tasks without access to the labels. Additionally, we introduce regularization tokens, a novel regularization method critical for training of JEPA-based models on structured data.
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Concurrent computation and communication (C3) is a pervasive paradigm in ML and other domains, making its performance optimization crucial. In this paper, we carefully characterize C3 in ML on GPUs, which are most widely deployed for ML training and inference. We observe that while C3 leads to performance uplifts, the uplifts are far lower than ideal speedups (serial computation and communication versus maximum of computation or communication; all times from isolated executions). C3 on average achieves only 21% of ideal speedup, this is due to known challenges of compute and memory interference between concurrent GPU kernels (that is, sharing of GPU's compute units, caches and HBM). To attain better performance for C3, first, we evaluate dual strategies of schedule prioritization and careful resource partitioning of compute units on GPUs to push performance attained with C3 (on average 42% of ideal speedup). We also provide heuristics that can guide a runtime while employing these strategies. To further enhance C3 performance, we propose to mitigate C3 interference by offloading communication tasks to the GPU's DMA engines. To this end, we build Concurrent Communication CoLlectives (ConCCL) proof-of-concepts that harness DMA engines for communication. We show how ConCCL considerably closes the gap between realized and ideal speedup for C3 (on average 72% of ideal speedup is realized, up to 1.67x speedup). Overall, our work makes a strong case for GPU DMA engine advancements to better support C3 on GPUs.
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The increasing use of Machine Learning (ML) software can lead to unfair and unethical decisions, thus fairness bugs in software are becoming a growing concern. Addressing these fairness bugs often involves sacrificing ML performance, such as accuracy. To address this issue, we present a novel counterfactual approach that uses counterfactual thinking to tackle the root causes of bias in ML software. In addition, our approach combines models optimized for both performance and fairness, resulting in an optimal solution in both aspects. We conducted a thorough evaluation of our approach on 10 benchmark tasks using a combination of 5 performance metrics, 3 fairness metrics, and 15 measurement scenarios, all applied to 8 real-world datasets. The conducted extensive evaluations show that the proposed method significantly improves the fairness of ML software while maintaining competitive performance, outperforming state-of-the-art solutions in 84.6% of overall cases based on a recent benchmarking tool.
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Federated learning is a distributed collaborative machine learning paradigm that has gained strong momentum in recent years. In federated learning, a central server periodically coordinates models with clients and aggregates the models trained locally by clients without necessitating access to local data. Despite its potential, the implementation of federated learning continues to encounter several challenges, predominantly the slow convergence that is largely due to data heterogeneity. The slow convergence becomes particularly problematic in cross-device federated learning scenarios where clients may be strongly limited by computing power and storage space, and hence counteracting methods that induce additional computation or memory cost on the client side such as auxiliary objective terms and larger training iterations can be impractical. In this paper, we propose a novel federated aggregation strategy, TurboSVM-FL, that poses no additional computation burden on the client side and can significantly accelerate convergence for federated classification task, especially when clients are "lazy" and train their models solely for few epochs for next global aggregation. TurboSVM-FL extensively utilizes support vector machine to conduct selective aggregation and max-margin spread-out regularization on class embeddings. We evaluate TurboSVM-FL on multiple datasets including FEMNIST, CelebA, and Shakespeare using user-independent validation with non-iid data distribution. Our results show that TurboSVM-FL can significantly outperform existing popular algorithms on convergence rate and reduce communication rounds while delivering better test metrics including accuracy, F1 score, and MCC.
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