The Keller-Segel (KS) chemotaxis system is used to describe the overall behavior of a collection of cells under the influence of chemotaxis. However, solving the KS chemotaxis system and generating its aggregation patterns remain challenging due to the emergence of solutions exhibiting near-singular behavior, such as finite-time blow-up or concentration phenomena. Building on a Lagrangian framework of the KS system, we develop DeepLagrangian, a self-adaptive density estimation method that learns and generates aggregation patterns and near-singular solutions of the KS system in two- and three-dimensional (2D and 3D) space under different physical parameters. The main advantage of the Lagrangian framework is its inherent ability to adapt to near-singular solutions. To develop this framework, we normalize the KS solution into a probability density function (PDF), derive the corresponding normalized KS system, and utilize the property of the continuity equation to rewrite the system into a Lagrangian framework. We then define a physics-informed Lagrangian loss to enforce this framework and incorporate a flow-based generative model, called the time-dependent KRnet, to approximate the PDF by minimizing the loss. Furthermore, we integrate time-marching strategies with the time-dependent KRnet to enhance the accuracy of the PDF approximation. After obtaining the approximate PDF, we recover the original KS solution. We also prove that the Lagrangian loss effectively controls the Kullback-Leibler (KL) divergence between the approximate PDF and the exact PDF. In the numerical experiments, we demonstrate the accuracy of our DeepLagrangian method for the 2D and 3D KS chemotaxis system with/without advection.
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