Given integers $n > k > 0$, and a set of integers $L \subset [0, k-1]$, an $L$-system is a family of sets $\mathcal{F} \subset \binom{[n]}{k}$ such that $|F \cap F'| \in L$ for distinct $F, F'\in \mathcal{F}$. $L$-systems correspond to independent sets in a certain generalized Johnson graph $G(n, k, L)$, so that the maximum size of an $L$-system is equivalent to finding the independence number of the graph $G(n, k, L)$. The Lov\'asz number $\vartheta(G)$ is a semidefinite programming approximation of the independence number of a graph $G$. In this paper, we determine the order of magnitude of $\vartheta(G(n, k, L))$ of any generalized Johnson graph with $k$ and $L$ fixed and $n\rightarrow \infty$. As an application of this theorem, we give an explicit construction of a graph $G$ on $n$ vertices with large gap between the Lov\'asz number and the Shannon capacity $c(G)$. Specifically, we prove that for any $\epsilon > 0$, for infinitely many $n$ there is a generalized Johnson graph $G$ on $n$ vertices which has ratio $\vartheta(G)/c(G) = \Omega(n^{1-\epsilon})$, which greatly improves on the best known explicit construction.
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