Acid-base reactions are ubiquitous in nature. Understanding their mechanisms is crucial in many fields, from biochemistry to industrial catalysis. Unfortunately, experiments only give limited information without much insight into the molecular behaviour. Atomistic simulations could complement experiments and shed precious light on microscopic mechanisms. The large free energy barriers connected to proton dissociation however make the use of enhanced sampling methods mandatory. Here we perform an ab initio molecular dynamics (MD) simulation and enhance sampling with the help of methadynamics. This has been made possible by the introduction of novel descriptors or collective variables (CVs) that are based on a conceptually new outlook on acid-base equilibria. We test successfully our approach on three different aqueous solutions of acetic acid, ammonia, and bicarbonate. These are representative of acid, basic, and amphoteric behaviour.
翻译:酸基反应是无处不在的。了解它们的机制在许多领域至关重要,从生物化学到工业催化。不幸的是,实验只能提供有限的信息,而没有深入了解分子行为。原子模拟可以补充实验,并给微粒体机能带来宝贵的光辉。与质子分离相关的巨大的自由能源屏障使得使用强化的取样方法成为强制性的。在这里,我们在甲基动力学的帮助下,进行初始分子动态模拟(MD),并加强取样。这之所以成为可能,是因为引入了新的描述或集体变量(CVs),它们以对酸基平衡进行概念上的新观点为基础。我们成功地试验了我们的方法,以三种不同的水溶液溶液方法,即乙酸、氨和双碳酸。这些方法代表了酸、基本和亚光化行为。